DNA2Graph

Automated electron microscopy image analysis for DNA molecules

Source Code

DNA2Graph source code is available on GitHub.

View Source Code on GitHub

Technical Manual

This document provides a technical description of the algorithms and core logic underlying DNA2Graph.
It is intended for technical users who wish to understand the software’s internal functioning and configuration parameters.

Download Technical Manual

Default Parameter Configuration

Default DNA2Graph parameters were optimized and validated for the following acquisition setup:

  • MAPS Set Up: 17436nm
  • Microscope: Talos F200C G2
  • TEM mode: bright field
  • Bright field mode: microprobe
  • Condenser 2 aperture (microns): 150 um
  • Objective aperture (microns): 30 um
  • Camera: Ceta-S
  • Tile set: 4x4
  • Overlap: 10%
  • Resolution pixels: 4096x4096
  • Magnification: 8500X
NOTE: Different acquisition setups may require parameter tuning.
Download Default Parameter Configuration (JSON)